PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Phvul.004G060500.1
Common NamePHAVU_004G060500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Phaseolus
Family M-type_MADS
Protein Properties Length: 313aa    MW: 35678.2 Da    PI: 4.6328
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Phvul.004G060500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF34.33.1e-112769143
                        S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
              SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                        k i+n+  r++tf +R+ g++KK +E S  C+ e ++i+f  +
  Phvul.004G060500.1 27 KHISNEKFRKTTFLRRKRGLMKKISEFSKKCGGEHCLIVFDDD 69
                        689************************************9766 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.4E-51979IPR002100Transcription factor, MADS-box
PROSITE profilePS5006613.9321970IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.49E-132296IPR002100Transcription factor, MADS-box
PfamPF003194.9E-122970IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MSDSEESLER KTWIQKQENG SCKITLKHIS NEKFRKTTFL RRKRGLMKKI SEFSKKCGGE  60
HCLIVFDDDN GDVGPMTSPQ NPVEVHSMIQ KYYKSEIKNE RPHKTYGIEE FLENRKNMIE  120
TEISKVDKHI SSIKYPTWDP SMIIMEEDQL RAFCAHVDAK IEACDRGIKL LKDQPQGFVS  180
NMAQENAVAT TSHPTQANYL QNISQSETLL DDFLKQLNDK SYGMVDFSSP VDVPLNSTNE  240
LSDLEFEELM MELSSWDWPY QACDDLVGCN NKVDESVLPS ICVEYQGGGD LHALPPSLDV  300
SDDYCNMFFL NV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150441e-126AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007151599.10.0hypothetical protein PHAVU_004G060500g
TrEMBLV7C2J90.0V7C2J9_PHAVU; Uncharacterized protein
STRINGGLYMA13G07720.13e-69(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53431111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G55690.13e-10M-type_MADS family protein